The test set sequences both for masking and mimicking mode inference are cached. Thus, the user can easily explore their individual performance (both the prediction vs. the evolutionarily selected codons and metrics to measure the prediction). For details of how the test-set was constructed, please see our paper.
(1) Inference type - Mask/Mimic; the two inference type are presented at the paper. In mask mode the input to the model is the AA sequence of the target protein. In mimic mode, an additional codon sequence aligned to the target AA sequence is provided to the model.
(2) Model window size - 10/30/50/75/100/150; In the paper, we present different model trained using different window sizes. Each option in this category activates a different model for prediction.